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Source code


Name: seqalign
Created: Aug 17, 2009
Updated: Aug 17, 2009
SVN Updated: Aug 17, 2009

Other project properties

Category: Other
Language: Verilog
Development status: Alpha
Additional info:
WishBone Compliant: No
License: LGPL


This is an easily configurable systolic array of processors to compute the optimal alignment between two DNA sequences. It supports affine gap penalties, and is configurable between local (smith-waterman) and global (needleman-wunsch) alignment algorithms by setting an internal register. All code is in Verilog.