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Source code

Details

Name: seqalign
Created: Aug 17, 2009
Updated: Aug 17, 2009
SVN Updated: Aug 17, 2009

Other project properties

Category: Other
Language: Verilog
Development status: Alpha
Additional info:
WishBone Compliant: No
License: LGPL

Description

This is an easily configurable systolic array of processors to compute the optimal alignment between two DNA sequences. It supports affine gap penalties, and is configurable between local (smith-waterman) and global (needleman-wunsch) alignment algorithms by setting an internal register. All code is in Verilog.